CellMiner - Query Datasets

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Cell Line Metadata

Data Set Metadata

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Mutation Data

Citing CellMiner

Step 1 - Select user input type:

	Gene identifier	Platform-specific identifier
	Chromosome or Genomic location	miRNA

Step 1a - Select gene identifier type:

	HUGO Name	Gene symbol	Gene name
Examples:	`ABCB1`	`ABCB1`	`ABC`
	Entrez gene id	RefSeq(mRNA)	RefSeq(protein)
	`19`	`NM_005502`	`NP_005493`

Step 2 - User input format:

Input list

Upload file

Step 2a - Input the identifier(s):

Example:	`abcb1 BRCA2 CNBP`
`Note: this will return only exact matches to the list entered.`

Step 3 - Specify cell lines:

NCI-60

DU145/RC01

Step 4 - Select one or more chips/normalization methods: Step 5 - Select data to include with output:

HUGO	Entrez gene id	Gene symbol
Chromosome	Cytoband	RefSeq(mRNA)
RefSeq(protein)	Start	End

Step 6 - Select output data format (select 1):

HTML

MS-Excel

Text File

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Notice and Disclaimer

	Chromosome	Cytoband	Chromosome:start:end	Chromosome:start:offset
Examples:	`2`	`2q or 2q14.2`	`10:230000:235000`	`10:230000:5000`

Data type	Normalization Method	Data type	Normalization Method
DNA: BAC aCGH		DNA: E-cadherin methylation
Protein: Lysate Array		RNA: ABC Transporters (RT-PCR)
RNA: Affy HG-U95 (A-E)		RNA: Affy HU6800
RNA: Affy U133(A-B)		RNA: cDNA Array
RNA: NCI60 Radiation		RNA: Transporter Array
Include mutation data?

Data type	Normalization Method	Data type	Normalization Method
RNA: Affy HG-U95 (A-E)		RNA: Affy U133(A-B)
Include mutation data?

Data type	Normalization Method	Data type	Normalization Method
DNA: BAC aCGH		DNA: E-cadherin methylation
Protein: Lysate Array		RNA: ABC Transporters (RT-PCR)
RNA: Affy HG-U95 (A-E)		RNA: Affy U133(A-B)
RNA: cDNA Array		RNA: MicroRNA
RNA: NCI60 Radiation		RNA: Transporter Array
Include mutation data?

	Data type	Normalization Method
	RNA: MicroRNA
	Include mutation data?


Example:	(The uploaded file must be a plain text file. One identifier per line.)

	Affymetrix id
Examples:	`203504_s_at`

	miRNA id
Example:	`mir-025-prec`