Gene transcript z scores

This tool compiles all non-degenerate transcript probe data from five microarray platforms.

The tool provides an Excel spreadsheet for each gene the user has input that includes:

  1. average intensity Z scores in a tabular form and visualized as a bar graph (see below).
  2. intensity values for those probes that passed quality control to a maximum of 253
  3. the z-score transforms for each probe that passed quality control to a maximum of 253.

The data may be obtained in toto at Download Data Sets under "RNA: 5 Platform Gene Transcript" (http://discover.nci.nih.gov/cellminer/loadDownload.do).
A brief platform description is available in Data Set Metadata under "RNA: 5 Platform Gene Transcript" (http://discover.nci.nih.gov/cellminer/datasets.do).

CHEK2 [GeneCards]
Chromosome 22
Cytogenetic band q12.2
Start 29083730
End 29137821
Size 54091
Orientation -

Table 1: Average transcript intensity Z scores

Cell lines Average Z scores

BR:MCF7 1.31
BR:MDA_MB_231 -1.01
BR:HS578T -0.39
BR:BT_549 0.88
BR:T47D 0.64
CNS:SF_268 -0.49
CNS:SF_295 -0.69
CNS:SF_539 na
CNS:SNB_19 -1.39
CNS:SNB_75 -0.42
CNS:U251 -0.96
CO:COLO205 0.49
CO:HCC_2998 1.04
CO:HCT_116 1.23
CO:HCT_15 1.62
CO:HT29 1.35
CO:KM12 0.75
CO:SW_620 -0.92
LE:CCRF_CEM 0.61
LE:HL_60 1.28
LE:K_562 0.93
LE:MOLT_4 0.66
LE:RPMI_8226 1.09
LE:SR 0.12
ME:LOXIMVI -0.91
ME:MALME_3M 0.12
ME:M14 -0.34
ME:SK_MEL_2 -1.22
ME:SK_MEL_28 1.36
ME:SK_MEL_5 -0.12
ME:UACC_257 0.36
ME:UACC_62 0.20
ME:MDA_MB_435 1.02
ME:MDA_N 0.50
LC:A549 -0.76
LC:EKVX -1.01
LC:HOP_62 -1.01
LC:HOP_92 -0.85
LC:NCI_H226 -1.79
LC:NCI_H23 0.97
LC:NCI_H322M 0.67
LC:NCI_H460 0.05
LC:NCI_H522 0.56
OV:IGROV1 -0.87
OV:OVCAR_3 1.60
OV:OVCAR_4 0.98
OV:OVCAR_5 -0.93
OV:OVCAR_8 -0.82
OV:SK_OV_3 -0.25
OV:NCI_ADR_RES -0.90
PR:PC_3 0.32
PR:DU_145 0.05
RE:786_0 -0.58
RE:A498 -1.08
RE:ACHN -0.61
RE:CAKI_1 -0.40
RE:RXF_393 -0.28
RE:SN12C 0.06
RE:TK_10 -0.59
RE:UO_31 -1.18