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  1. Corcoran ME, Kroes RA, Burgdorf JS, Moskal JR.
    Regional Changes in Gene Expression after Limbic Kindling.
    Cell Mol Neurobiol. 2011 Mar 19. [Epub ahead of print].
    [PubMed]

  2. Shahzad K, Cadeiras M, Memon S, Zeeberg B, Klingler T, Sinha A, Tabak EG, Unniachan S, Deng MC.
    Gene Expression Signatures of Peripheral Blood Mononuclear Cells during the Early Post-Transplant Period in Patients Developing Cardiac Allograft Vasculopathy.
    J Transplant. 2010;2010:719696. Epub 2010 Dec 28.
    [PubMed]

  3. Cha S, Imielinski MB, Rejtar T, Richardson EA, Thakur D, Sgroi DC, Karger BL.
    In situ proteomic analysis of human breast cancer epithelial cells using laser capture microdissection: annotation by protein set enrichment analysis and gene ontology..
    Mol Cell Proteomics. 2010 Nov;9(11):2529-44. Epub 2010 Aug 25.
    [PubMed]

  4. Patel AK, Olson D, Tikoo SK.
    Proteomic analysis of bovine nucleolus.
    Genomics Proteomics Bioinformatics. 2010 Sep;8(3):145-58.
    [PubMed]

  5. Sinha A, Shahzad K, Latif F, Cadeiras M, Von Bayern MP, Oz S, Naka Y, Deng MC.
    Peripheral blood mononuclear cell transcriptome profiles suggest T-cell immunosuppression after uncomplicated mechanical circulatory support device surgery.
    Hum Immunol. 2010 Feb;71(2):164-9. Epub 2009 Oct 30.
    [PubMed]

  6. Lobenhofer EK, Auman JT, Blackshear PE, Boorman GA, Bushel PR, Cunningham ML, Fostel JM, Gerrish K, Heinloth AN, Irwin RD, Malarkey DE, Merrick BA, Sieber SO, Tucker CJ, Ward SM, Wilson RE, Hurban P, Tennant RW, Paules RS.
    Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype.
    Genome Biol. 2008;9(6):R100.
    [PubMed]

  7. Diehn M, Nardini C, Wang DS, McGovern S, Jayaraman M, Liang Y, Aldape K, Cha S, Kuo MD.
    Identification of noninvasive imaging surrogates for brain tumor gene-expression modules
    Proc Natl Acad Sci U S A. 2008 Apr 1;105(13):5213-8.
    [PubMed]

  8. Rescan PY, Montfort J, Rallière C, Le Cam A, Esquerré D, Hugot K.
    Dynamic gene expression in fish muscle during recovery growth induced by a fasting-refeeding schedule
    BMC Genomics. 2007 Nov 28;8:438.
    [PubMed]

  9. Kim PM, Korbel JO, Gerstein MB.
    Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context
    Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20274-9.
    [PubMed]

  10. Campanaro S, Picelli S, Torregrossa R, Colluto L, Ceol M, Del Prete D, D'Angelo A, Valle G, Anglani F.
    Genes involved in TGFβ1-driven epithelial-mesenchymal transition of renal epithelial cells are topologically related in the human interactome map
    BMC Genomics. 2007 Oct 22;8:383.
    [PubMed]

  11. Baron D, Montfort J, Houlgatte R, Fostier A, Guiguen Y.
    Androgen-induced masculinization in rainbow trout results in a marked dysregulation of early gonadal gene expression profiles
    BMC Genomics. 2007 Oct 4;8:357.
    [PubMed]

  12. Fry RC, Navasumrit P, Valiathan C, Svensson JP, Hogan BJ, Luo M, Bhattacharya S, Kandjanapa K, Soontararuks S, Nookabkaew S, Mahidol C, Ruchirawat M, Samson LD.
    Activation of Inflammation/NF-κB Signaling in Infants Born to Arsenic-Exposed Mothers
    PLoS Genet. 2007 Nov 23;3(11):e207
    [PubMed]

  13. Gagné JP, Éthier C, Gagné P, Mercier G, Bonicalzi ME, Mes-Masson AM, Droit A, Winstall E, Isabelle M, Poirier GG.
    Comparative proteome analysis of human epithelial ovarian cancer
    Proteome Sci. 2007 Sep 24;5:16.
    [PubMed]

  14. Das D, Clark TA, Schweitzer A, Yamamoto M, Marr H, Arribere J, Minovitsky S, Poliakov A, Dubchak I, Blume JE, Conboy JG.
    A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing.
    Nucleic Acids Res. 2007;35(14):4845-57.
    [PubMed]

  15. Cui Y, McBride SJ, Boyd WA, Alper S, Freedman JH.
    Toxicogenomic analysis of Caenorhabditis elegans reveals novel genes and pathways involved in the resistance to cadmium toxicity
    Genome Biol. 2007 Jun 25;8(6):R122
    [PubMed]

  16. Hao Y, Sood S, Triadafilopoulos G, Kim JH, Wang Z, Sahbaie P, Omary MB, Lowe AW.
    Gene expression changes associated with Barrett's esophagus and Barrett's-associated adenocarcinoma cell lines after acid or bile salt exposure.
    BMC Gastroenterol. 2007 Jun 27;7:24.
    [PubMed]

  17. Torres A, Storey L, Anders M, Miller RL, Bulbulian BJ, Jin J, Raghavan S, Lee J, Slade HB, Birmachu W
    Immune-mediated changes in actinic keratosis following topical treatment with imiquimod 5% cream
    J Transl Med. 2007 Jan 26;5:7.
    [PubMed]

  18. Seung-Jae Noh, Kyooyeol Lee, Hyojung Paik and Cheol-Goo Hur
    TISA: Tissue-specific Alternative Splicing in Human and Mouse Genes
    DNA Res. 2006 Oct 31;13(5):229-43.
    [PubMed]

  19. Campagne F, Skrabanek L
    Mining expressed sequence tags identifies cancer markers of clinical interest
    BMC Bioinformatics. 2006 Nov 1;7:481.
    [PubMed]

  20. Lim MS, Elenitoba-Johnson KSJ
    Mass Spectrometry-based Proteomic Studies of Human Anaplastic Large Cell Lymphoma
    Mol Cell Proteomics. 2006 Oct;5(10):1787-98.
    [Pubmed]

  21. Giusti B, Fibbi G, Margheri F, Serrati S, Rossi L, Poggi F, Lapini I, Magi A, Del Rosso A, Cinelli M, Guiducci S, Kahaleh B, Bazzichi L, Bombardieri S, Matucci-Cerinic M, Gensini GF, Del Rosso M, Abbate R.
    A model of anti-angiogenesis: differential transcriptosome profiling of microvascular endothelial cells from diffuse systemic sclerosis patients
    Arthritis Res Ther. 2006;8(4):R115.
    [PubMed]

  22. Beldade P, Rudd S, Gruber JD, Long AD.
    A wing expressed sequence tag resource for Bicyclus anynana butterflies, an evo-devo model
    BMC GENOMICS 7: Art. No. 130 MAY 31 2006
    [PubMed]

  23. Dere E, Boverhof DR, Burgoon LD, Zacharewski TR.
    In vivo - in vitro toxicogenomic comparison of TCDD-elicited gene expression in Hepa1c1c7 mouse hepatoma cells and C57BL/6 hepatic tissue
    BMC Genomics. 2006 Apr 12;7:80.
    [PubMed]

  24. Fernandez-Cobo M, Holland JF, Pogo BG.
    Transcription profiles of non-immortalized breast cancer cell lines
    BMC Cancer. 2006 Apr 20;6:99.
    [PubMed]

  25. Wu CG, Budhu A, Chen S, Zhou X, Popescu NC, Valerie K, Wang XW.
    Effect of hepatitis C virus core protein on the molecular profiling of human B lymphocytes
    Mol Med. 2006 Jan-Mar;12(1-3):47-53.
    [PubMed]

  26. Pilch B, Mann M.
    Large-scale and high-confidence proteomic analysis of human seminal plasma
    Genome Biol. 2006;7(5):R40.
    [PubMed]

  27. Byron J. Gao, Obi L.Griffith, Martin Ester, Steven J.M. Jones
    Discovering Significant OPSM Subspace Clusters in Massive Gene Expression Data
    The 12th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD 06), Philadelphia, USA, August 20-23, 2006.

  28. Graudens E, Boulanger V, Mollard C, Mariage-Samson R, Barlet X, Gremy G, Couillault C, Lajemi M, Piatier-Tonneau D, Zaborski P, Eveno E, Auffray C, Imbeaud S.
    Deciphering cellular states of innate tumor drug responses.
    Genome Biol. 2006;7(3):R19.
    [PubMed]

  29. Pett MR, Herdman MT, Palmer RD, Yeo GS, Shivji MK, Stanley MA, Coleman N.
    Selection of cervical keratinocytes containing integrated HPV16 associates with episome loss and an endogenous antiviral response.
    P NATL ACAD SCI USA 103 (10): 3822-3827 MAR 7 2006
    [PubMed]

  30. Shou J, Bull CM, Li L, Qian HR, Wei T, Luo S, Perkins D, Solenberg PJ, Tan SL, Chen XY, Roehm NW, Wolos JA, Onyia JE.
    Identification of blood biomarkers of rheumatoid arthritis by transcript profiling of peripheral blood mononuclear cells from the rat collagen-induced arthritis model.
    Arthritis Res Ther. 2006 Jan 10;8(1):R28
    [PubMed]

  31. Gene Ontology Consortium
    The Gene Ontology (GO) project in 2006
    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D322-6.
    [PubMed]

  32. Crockett DK, Lin Z, Vaughn CP, Lim MS, Elenitoba-Johnson KS.
    Identification of proteins from formalin-fixed paraffin-embedded cells by LC-MS/MS
    LAB INVEST 85 (11): 1405-1415 NOV 2005
    [PubMed]

  33. McNutt MC, Tongbai R, Cui W, Collins I, Freebern WJ, Montano I, Haggerty CM, Chandramouli G, Gardner K.
    Human promoter genomic composition demonstrates non-random groupings that reflect general cellular function
    BMC BIOINFORMATICS 6: Art. No. 259 OCT 18 2005
    [PubMed]

  34. Frigessi A, van de Wiel MA, Holden M, Svendsrud DH, Glad IK, Lyng H.
    Genome-wide estimation of transcript concentrations from spotted cDNA microarray data
    Nucleic Acids Res. 2005 Oct 4;33(17):e143.
    [PubMed]

  35. Lomax J
    Get ready to GO! A biologist's guide to the Gene Ontology
    BRIEF BIOINFORM 6 (3): 298-304 SEP 2005
    [PubMed]

  36. Campanaro S, Vezzi A, Vitulo N, Lauro FM, D'Angelo M, Simonato F, Cestaro A, Malacrida G, Bertoloni G, Valle G, Bartlett DH.
    Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains
    BMC GENOMICS 6: Art. No. 122 SEP 14 2005
    [PubMed]

  37. Sandberg R, Ernberg I.
    The molecular portrait of in vitro growth by meta-analysis of gene-expression profiles
    Genome Biol. 2005;6(8):R65. Epub 2005 Jul 27.
    [PubMed]

  38. Chen YF, Shin SJ, Lin SR
    Ets1 Was Significantly Activated by ERK1/2 in Mutant K-ras Stably Transfected Human Adrenocortical Cells
    DNA Cell Biol. 2005 Feb;24(2):126-32.
    [PubMed]

  39. Anderle P, Sengstag T, Mutch DM, Rumbo M, Praz V, Mansourian R, Delorenzi M, Williamson G, Roberts MA.
    Changes in the transcriptional profile of transporters in the intestine along the anterior-posterior and crypt-villus axes
    BMC GENOMICS 6: Art. No. 69 MAY 10 2005
    [PubMed]

  40. Shah V, Sridhar S, Beane J, Brody JS, Spira A.
    SIEGE: Smoking induced epithelial gene expression database
    NUCLEIC ACIDS RES 33: D573-D579 Sp. Iss. SI JAN 1 2005
    [PubMed]

  41. Halaschek-Wiener J, Khattra JS, McKay S, Pouzyrev A, Stott JM, Yang GS, Holt RA, Jones SJ, Marra MA, Brooks-Wilson AR, Riddle DL.
    Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression
    GENOME RES 15 (5): 603-615 MAY 2005
    [PubMed]

  42. Yan W, Lee H, Yi EC, Reiss D, Shannon P, Kwieciszewski BK, Coito C, Li XJ, Keller A, Eng J, Galitski T, Goodlett DR, Aebersold R, Katze MG
    System-based proteomic analysis of the interferon response in human liver cells
    Genome Biol. 2004;5(8):R54. Epub 2004 Jul 22
    [PubMed]

  43. Annereau JP, Szakacs G, Tucker CJ, Arciello A, Cardarelli C, Collins J, Grissom S, Zeeberg BR, Reinhold W, Weinstein JN, Pommier Y, Paules RS, and Gottesman MM
    Analysis of ATP-Binding Cassette Transporter Expression in Drug-Selected Cell Lines by a Microarray Dedicated to Multidrug Resistance.
    Mol Pharmacol. 2004 Dec;66(6):1397-405. Epub 2004 Sep 01.
    [PubMed]

  44. Stevens EV, Posadas EM, Davidson B, Kohn EC.
    Proteomics in cancer
    ANN ONCOL 15: 167-171 Suppl. 4 2004
    [PubMed]

  45. Wang X, Wang M, Amarzguioui M, Liu F, Fodstad O, Prydz H.
    Downregulation of tissue factor by RNA interference in human melanoma Lox-L cells reduces pulmonary metastasis in nude mice
    INT J CANCER 112 (6): 994-1002 DEC 20 2004
    [PubMed]

  46. Gracey AY, Fraser EJ, Li W, Fang Y, Taylor RR, Rogers J, Brass A, Cossins AR.
    Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate
    P NATL ACAD SCI USA 101 (48): 16970-16975 NOV 30 2004
    [PubMed]

  47. Midori A. Harris and Helen Parkinson
    Standards and Ontologies for Functional Genomics 2
    Comparative and Functional Genomics Volume 5 (2004), Issue 8, Pages 618-622

    Subscriptions Required (available to NIH online)

  48. Talvinen K, Tuikkala J, Nevalainen O, Rantanen A, HirsimŠki P, Sundstršm J, Kronqvist P.
    Proliferation marker securin identifies favourable outcome in invasive ductal breast cancer
    Br J Cancer. 2008 Jul 22;99(2):335-40.
    [PubMed]

  49. Yang S, Liu T, Li S, Zhang X, Ding Q, Que H, Yan X, Wei K, Liu S.
    Comparative proteomic analysis of brains of naturally aging mice.
    Neuroscience. 2008 Jun 26;154(3):1107-20.
    [PubMed]

  50. Pohjanvirta R, Boutros PC, Moffat ID, LindŽn J, Wendelin D, Okey AB
    Genome-wide effects of acute progressive feed restriction in liver and white adipose tissue
    Toxicol Appl Pharmacol. 2008 Jul 1;230(1):41-56.
    [PubMed]

  51. Nordgard SH, Johansen FE, Alnaes GI, Bucher E, SyvŠnen AC, Naume B, Bżrresen-Dale AL, Kristensen VN.
    Genome-wide analysis identifies 16q deletion associated with survival, molecular subtypes, mRNA expression, and germline haplotypes in breast cancer patients
    Genes Chromosomes Cancer. 2008 Aug;47(8):680-96.
    [PubMed]

  52. Ruden DM, Jamison DC, Zeeberg BR, Garfinkel MD, Weinstein JN, Rasouli P, Lu X
    The EDGE hypothesis: epigenetically directed genetic errors in repeat-containing proteins (RCPs) involved in evolution, neuroendocrine signaling, and cancer.
    Front Neuroendocrinol. 2008 Jun;29(3):428-44.
    [PubMed]

  53. Jeffrey H. Ringrose, Rienk E. Jeeninga, Ben Berkhout, and Dave Speijer
    Proteomic Studies Reveal Coordinated Changes in T-Cell Expression Patterns upon Infection with Human Immunodeficiency Virus Type 1
    J Virol. 2008 May;82(9):4320-30.
    [PubMed]

  54. Chang YC, Lin SY, Liang SY, Pan KT, Chou CC, Chen CH, Liao CL, Khoo KH, Meng TC.
    Tyrosine Phosphoproteomics and Identification of Substrates of Protein Tyrosine Phosphatase dPTP61F in Drosophila S2 Cells by Mass Spectrometry-Based Substrate Trapping Strategy
    J Proteome Res. 2008 Mar 7;7(3):1055-1066.
    [PubMed]

  55. Wilson-Grady JT, Villén J, Gygi SP.
    Phosphoproteome Analysis of Fission Yeast
    J Proteome Res. 2008 Mar;7(3):1088-97.
    [PubMed]

  56. Finney GL, Blackler AR, Hoopmann MR, Canterbury JD, Wu CC, Maccoss MJ.
    Label-Free Comparative Analysis of Proteomics Mixtures Using Chromatographic Alignment of High-Resolution muLC-MS Data
    Anal Chem. 2008 Feb 15;80(4):961-71.
    [PubMed]

  57. Michalak P, Malone JH.
    Testis-derived microRNA profiles of African clawed frogs (Xenopus) and their sterile hybrids
    Genomics. 2008 Feb;91(2):158-64.
    [PubMed]

  58. Delneri D, Hoyle DC, Gkargkas K, Cross EJ, Rash B, Zeef L, Leong HS, Davey HM, Hayes A, Kell DB, Griffith GW, Oliver SG.
    Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures
    Nat Genet. 2008 Jan;40(1):113-7
    [PubMed]

  59. Zougman A, Pilch B, Podtelejnikov A, Kiehntopf M, Schnabel C, Kumar C, Mann M.
    Integrated Analysis of the Cerebrospinal Fluid Peptidome and Proteome
    J Proteome Res. 2008 Jan;7(1):386-99.
    [PubMed]

  60. TA Wynn
    Cellular and molecular mechanisms of fibrosis
    J Pathol. 2008 Jan;214(2):199-210.
    [PubMed]

  61. Gao H, Fält S, Sandelin A, Gustafsson JA, Dahlman-Wright K.
    Genome-Wide Identification of Estrogen Receptor {alpha}-Binding Sites in Mouse Liver
    Mol Endocrinol. 2008 Jan;22(1):10-22.
    [PubMed]

  62. Young AN, Master VA, Paner GP, Wang MD, Amin MB.
    Renal epithelial neoplasms: diagnostic applications of gene expression profiling
    Adv Anat Pathol. 2008 Jan;15(1):28-38.
    [PubMed]

  63. Wei Shi, Wanlei Zhou and Dakang Xu
    Identifying cis-regulatory elements by statistical analysis and phylogenetic footprinting and analyzing their coexistence and related gene ontology
    Physiol Genomics. 2007 Nov 14;31(3):374-84.
    [PubMed]

  64. Heller G, Schmidt WM, Ziegler B, Holzer S, Müllauer L, Bilban M, Zielinski CC, Drach J, Zöchbauer-Müller S.
    Genome-wide transcriptional response to 5-aza-2'-deoxycytidine and trichostatin a in multiple myeloma cells
    Cancer Res. 2008 Jan 1;68(1):44-54.
    [PubMed]

  65. Woods CG, Kosyk O, Bradford BU, Ross PK, Burns AM, Cunningham ML, Qu P, Ibrahim JG, Rusyn I.
    Time course investigation of PPARα- and Kupffer cell-dependent effects of WY-14,643 in mouse liver using microarray gene expression
    Toxicol Appl Pharmacol. 2007 Dec 15;225(3):267-77
    [PubMed]

  66. Trempus CS, Dang H, Humble MM, Wei SJ, Gerdes MJ, Morris RJ, Bortner CD, Cotsarelis G, Tennant RW.
    Comprehensive Microarray Transcriptome Profiling of CD34-Enriched Mouse Keratinocyte Stem Cells
    J Invest Dermatol. 2007 Dec;127(12):2904-7.
    [PubMed]

  67. Haque T, Faury D, Albrecht S, Lopez-Aguilar E, Hauser P, Garami M, HanzŽly Z, Bogn‡r L, Del Maestro RF, Atkinson J, Nantel A, Jabado N.
    Gene Expression Profiling from Formalin-Fixed Paraffin-Embedded Tumors of Pediatric Glioblastoma
    Clin Cancer Res. 2007 Nov 1;13(21):6284-92.
    [PubMed]

  68. Torres A, Storey L, Anders M, Miller RL, Bulbulian BJ, Jin J, Raghavan S, Lee J, Slade HB, Birmachu W.
    Microarray analysis of aberrant gene expression in actinic keratosis: effect of the Toll-like receptor-7 agonist imiquimod
    Br J Dermatol. 2007 Dec;157(6):1132-47.
    [PubMed]

  69. Wallentine JC, Kim KK, Seiler CE 3rd, Vaughn CP, Crockett DK, Tripp SR, Elenitoba-Johnson KS, Lim MS.
    Comprehensive identification of proteins in Hodgkin lymphoma-derived ReedĐSternberg cells by LC-MS/MS
    LABORATORY INVESTIGATION 87 (11): 1113-1124 NOV 2007
    [PubMed]

  70. Blanding CR, Simmons SJ, Casati P, Walbot V, Stapleton AE.
    Coordinated regulation of maize genes during increasing exposure to ultraviolet radiation: identification of ultraviolet-responsive genes, functional processes and associated potential promoter motifs.
    Plant Biotechnol J. 2007 Nov;5(6):677-95.
    [PubMed]

  71. Newbold RR, Jefferson WN, Grissom SF, Padilla-Banks E, Snyder RJ, Lobenhofer EK.
    Developmental exposure to diethylstilbestrol alters uterine gene expression that may be associated with uterine neoplasia later in life
    Mol Carcinog. 2007 Sep;46(9):783-96.
    [PubMed]

  72. Zhan M, Yamaza H, Sun Y, Sinclair J, Li H, Zou S.
    Temporal and spatial transcriptional profiles of aging in Drosophila melanogaster
    Genome Res. 2007 Aug;17(8):1236-43.
    [PubMed]

  73. Kroes RA, Burgdorf J, Otto NJ, Panksepp J, Moskal JR.
    Social defeat, a paradigm of depression in rats that elicits 22-kHz vocalizations, preferentially activates the cholinergic signaling pathway in the periaqueductal gray.
    Behav Brain Res. 2007 Sep 4;182(2):290-300.
    [PubMed]

  74. Beyer RP, Fry RC, Lasarev MR, McConnachie LA, Meira LB, Palmer VS, Powell CL, Ross PK, Bammler TK, Bradford BU, Cranson AB, Cunningham ML, Fannin RD, Higgins GM, Hurban P, Kayton RJ, Kerr KF, Kosyk O, Lobenhofer EK, Sieber SO, Vliet PA, Weis BK, Wolfinger R, Woods CG, Freedman JH, Linney E, Kaufmann WK, Kavanagh TJ, Paules RS, Rusyn I, Samson LD, Spencer PS, Suk W, Tennant RJ, Zarbl H; Members of the Toxicogenomics Research Consortium
    Multicenter Study of Acetaminophen Hepatotoxicity Reveals the Importance of Biological Endpoints in Genomic Analyses
    Toxicol Sci. 2007 Sep;99(1):326-37.
    [PubMed]

  75. Gatti D, Maki A, Chesler EJ, Kirova R, Kosyk O, Lu L, Manly KF, Williams RW, Perkins A, Langston MA, Threadgill DW, Rusyn I.
    Genome-level analysis of genetic regulation of liver gene expression networks
    Hepatology. 2007 Aug;46(2):548-57.
    [PubMed]

  76. Niculescu MD, da Costa KA, Fischer LM, Zeisel SH.
    Lymphocyte gene expression in subjects fed a low-choline diet differs between those who develop organ dysfunction and those who do not
    Am J Clin Nutr. 2007 Jul;86(1):230-9.
    [PubMed]

  77. Goh SH, Josleyn M, Lee YT, Danner RL, Gherman RB, Cam MC, Miller JL.
    The human reticulocyte transcriptome
    Physiol Genomics. 2007 Jul 18;30(2):172-8.
    [PubMed]

  78. Philibert RA, Ryu GY, Yoon JG, Sandhu H, Hollenbeck N, Gunter T, Barkhurst A, Adams W, Madan A.
    Transcriptional profiling of subjects from the Iowa adoption studies.
    Am J Med Genet B Neuropsychiatr Genet. 2007 Jul 5;144(5):683-90.
    [PubMed]

  79. Langille MG, Clark DV.
    Parent genes of retrotransposition-generated gene duplicates in Drosophila melanogaster have distinct expression profiles
    Genomics. 2007 Sep;90(3):334-43.
    [PubMed]

  80. Dong MQ, Venable JD, Au N, Xu T, Park SK, Cociorva D, Johnson JR, Dillin A, Yates JR 3rd.
    Quantitative Mass Spectrometry Identifies Insulin Signaling Targets in C. elegans
    Science. 2007 Aug 3;317(5838):660-3.
    [PubMed]

  81. Feng Y, Sun B, Li X, Zhang L, Niu Y, Xiao C, Ning L, Fang Z, Wang Y, Zhang L, Cheng J, Zhang W, Hao X.
    Differentially expressed genes between primary cancer and paired lymph node metastases predict clinical outcome of node-positive breast cancer patients
    Breast Cancer Res Treat. 2007 Jul;103(3):319-29.
    [PubMed]

  82. Shin S, Sun Y, Liu Y, Khaner H, Svant S, Cai J, Xu QX, Davidson BP, Stice SL, Smith AK, Goldman SA, Reubinoff BE, Zhan M, Rao MS, Chesnut JD.
    Whole Genome Analysis of Human Neural Stem Cells Derived from Embryonic Stem Cells and Stem and Progenitor Cells Isolated from Fetal Tissue
    Stem Cells. 2007 May;25(5):1298-306.
    [PubMed]

  83. Patel MJ, Liu W, Sykes MC, Ward NE, Risin SA, Risin D, Jo H.
    Identification of mechanosensitive genes in osteoblasts by comparative microarray studies using the rotating wall vessel and the random positioning machine
    J Cell Biochem. 2007 Jun 1;101(3):587-99.
    [PubMed]

  84. Conway AM, James AB, Zang J, Morris BJ.
    Regulation of neuronal cdc20 (p55cdc) expression by the plasticity-related transcription factor zif268
    Synapse. 2007 Jun;61(6):463-8.
    [PubMed]

  85. Schumacher JA, Crockett DK, Elenitoba-Johnson KS, Lim MS.
    Evaluation of enrichment techniques for mass spectrometry: identification of tyrosine phosphoproteins in cancer cells
    J Mol Diagn. 2007 Apr;9(2):169-77.
    [PubMed]

  86. Faury D, Nantel A, Dunn SE, Guiot MC, Haque T, Hauser P, Garami M, Bognar L, Hanzely Z, Liberski PP, Lopez-Aguilar E, Valera ET, Tone LG, Carret AS, Del Maestro RF, Gleave M, Montes JL, Pietsch T, Albrecht S, Jabado N
    Molecular Profiling Identifies Prognostic Subgroups of Pediatric Glioblastoma and Shows Increased YB-1 Expression in Tumors
    J Clin Oncol. 2007 Apr 1;25(10):1196-208.
    [PubMed]

  87. Buchholz DR, Heimeier RA, Das B, Washington T, Shi YB.
    Pairing morphology with gene expression in thyroid hormone-induced intestinal remodeling and identification of a core set of TH-induced genes across tadpole tissues
    Dev Biol. 2007 Mar 15;303(2):576-90.
    [PubMed]

  88. Lujian Liao, Julie Pilotte, Tao Xu, Catherine C. L. Wong, Gerald M. Edelman, Peter Vanderklish, and John R. Yates, III
    BDNF Induces Widespread Changes in Synaptic Protein Content and Up-Regulates Components of the Translation Machinery: An Analysis Using High-Throughput Proteomics
    J Proteome Res. 2007 Mar;6(3):1059-71.
    [PubMed]

  89. Jiang X, Jiang X, Feng S, Tian R, Ye M, Zou H
    Development of Efficient Protein Extraction Methods for Shotgun Proteome Analysis of Formalin-Fixed Tissues
    J Proteome Res. 2007 Mar;6(3):1038-47.
    [PubMed]

  90. Munton RP, Tweedie-Cullen R, Livingstone-Zatchej M, Weinandy F, Waidelich M, Longo D, Gehrig P, Potthast F, Rutishauser D, Gerrits B, Panse C, Schlapbach R, Mansuy IM
    Qualitative and Quantitative Analyses of Protein Phosphorylation in Naive and Stimulated Mouse Synaptosomal Preparations
    Mol Cell Proteomics. 2007 Feb;6(2):283-93.
    [PubMed]

  91. Wagner W, Wein F, Roderburg C, Saffrich R, Faber A, Krause U, Schubert M, Benes V, Eckstein V, Maul H, Ho AD
    Adhesion of hematopoietic progenitor cells to human mesenchymal stem cells as a model for cell?cell interaction
    Exp Hematol. 2007 Feb;35(2):314-25.
    [PubMed]

  92. Fagerstrom-Billai F, Durand-Dubief M, Ekwall K, Wright AP
    Individual Subunits of the Ssn6-Tup11/12 Corepressor Are Selectively Required for Repression of Different Target Genes
    Mol Cell Biol. 2007 Feb;27(3):1069-82.
    [PubMed]

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  185. Buchholz M, Kestler HA, Holzmann K, Ellenrieder V, Schneiderhan W, Siech M, Adler G, Bachem MG, Gress TM.
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  187. Brors B.
    Microarray annotation and biological information on function
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    Novel markers of the human follicle-associated epithelium identified by genomic profiling and microdissection
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    Novel proteomic approaches for tissue analysis
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    Profiling of microdissected gastric epithelial cells reveals a cell type-specific response to Helicobacter pylori infection
    GASTROENTEROLOGY 127 (5): 1446-1462 NOV 2004
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