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Input Data File Preparation for Web Interface

The format of the total and changed-gene files for High-Throughput GoMiner is identical to that for the original GUI version. An additional constraint in High-Throughput GoMiner is that there must be no spaces in the file names.

High-Throughput GoMiner can simultaneously process many changed-gene files, using the same total-gene file. Either a single changed-gene file or zip archive containing multiple changed-gene files can be uploaded. Hidden Unix files (those that begin with a period) are ignored if they are accidentally included in the zip file. Single total or changed genes file names should end with a .txt extension, and zip archives should end with a .zip extension. The order of the results in some of the visualizations in the integrative output files depends on the order of files in the zip archive.

Command-Line Interface Input

A variant of this format is used for the command-line interface.


GoMiner™ is a development of the Genomics and Bioinformatics Group, Developmental Therapeutics Branch (DTB), Developmental Therapeutics Program (DTP), Center for Cancer Research (CCR), National Cancer Institute (NCI). We would like to hear from you. You can reach the team via email.

GoMiner was originally developed jointly by the Genomics and Bioinformatics Group (GBG) of LMP, NCI, NIH and the Medical Informatics and Bioimaging group of BME, Georgia Tech/Emory University. It is now maintained and under continuing development by GBG.

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