Input Data File Preparation for Web Interface

The format of the total and changed-gene files for High-Throughput GoMiner is identical to that for the original GUI version. An additional constraint in High-Throughput GoMiner is that there must be no spaces in the file names.

High-Throughput GoMiner can simultaneously process many changed-gene files, using the same total-gene file. Either a single changed-gene file or zip archive containing multiple changed-gene files can be uploaded. Hidden Unix files (those that begin with a period) are ignored if they are accidentally included in the zip file. Single total or changed genes file names should end with a .txt extension, and zip archives should end with a .zip extension. The order of the results in some of the visualizations in the integrative output files depends on the order of files in the zip archive.

Command-Line Interface Input

A variant of this format is used for the command-line interface.

GoMiner™ is a development of the Genomics and Pharmacology Facility, Developmental Therapeutics Branch (DTB), Center for Cancer Research (CCR), National Cancer Institute (NCI).

Please email us with any problems, questions or feedback on the tool.

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