Supplementary Materials

RedundancyMiner: De-replication of redundant and nearly-redundant
GO categories in microarray and proteomics analysis

Barry R. Zeeberg Vinodh N. Rajapakse Brian P. Brooks John N. Weinstein
Ari B. Kahn Robert F. Bonner Vladimir L. Larionov Yves Pommier
Martin Ehler Jacob D. Brown William Reinhold  
Thumbnail of CIM for genes versus categories for an interesting retinal development time-series cluster.  Click to Enlarge Figure S1. Original genes versus categories CIM for an interesting retinal development time-series cluster
Thumbnail of CIM of retinal development genes versus categories.  Click to Enlarge Figure S2. Reduced CIM of retinal development genes versus categories
Thumbnail of META CIM of retinal development genes versus categories.  Click to Enlarge Figure S3. META CIM of retinal development genes versus categories
Thumbnail of CIM showing kinetochore genes versus categories.  Click to Enlarge Figure S4. Original kinetochore genes versus categories CIM
Thumbnail of CIM showing reduced kinetochore genes versus categories.  Click to Enlarge Figure S5. Reduced CIM of kinetochore genes versus categories
Thumbnail of META CIM of kinetochore genes versus categories.  Click to Enlarge Figure S6. META CIM of kinetochore genes versus categories
Thumbnail of CIM showing reduced kinetochore genes versus categories.  Click to Enlarge Figure S7. Reduced CIM of kinetochore genes versus categories
Thumbnail of META CIM of kinetochore genes versus categories.  Click to Enlarge Figure S8. META CIM of kinetochore genes versus categories
Thumbnail of Table S1. Parameters used in HTGM analyses.  Click to Enlarge Table S1. Parameters used in HTGM analyses
Thumbnail of Table S2. Information for developers.  Click to Enlarge Table S2. Information for developers
Thumbnail of Table S3. Kinetochore genes.  Click to Enlarge Table S3. Kinetochore genes
Thumbnail of Table S4. Perl modules.  Click to Enlarge Table S4. Perl modules
Thumbnail of Table S5. Types of HTGM gene-category association files used by RedundancyMiner.  Click to Enlarge Table S5. Types of HTGM gene-category association files used by RedundancyMiner
Retinal development HTGM.  Click to download Retinal development HTGM download
Kinetochore genes HTGM. Click to download. Kinetochore genes HTGM download
RedundancyMiner program package.  Click to download RedundancyMiner program package download
PowerPoint user's manual.  Click to download PowerPoint user's manual
PDF format of PowerPoint user's manual.  Click to download PDF format of PowerPoint user's manual
Simplified version of the HTGM result directory that is exemplified in the user's manual.  Click to download Simplified version of the HTGM result directory that is exemplified in the user's manual