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Genomics and Bioinformatics Group

2007 Publication

Genomics and Bioinformatics Group
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Opportunities and challenges in ovarian cancer research, a perspective from the 11th Ovarian cancer action/HHMT Forum, Lake Como, March 2007
Gynecol Oncol. 2007 Dec 19
Ashworth A, Balkwill F, Bast RC Jr, Berek JS, Kaye A, Boyd JA, Mills G, Weinstein JN, Woolley K, Workman P.

The LeFE algorithm: embracing the complexity of gene expression in the interpretation of microarray data
Genome Biol. 2007 Sep 10;8(9):R187
Gabriel S Eichler, Mark Reimers, David Kane and John N Weinstein

A strategy for predicting the chemosensitivity of human cancers and its application to drug discovery
Proc Natl Acad Sci U S A. 2007 Jul 31
Lee JK, Havaleshko DM, Cho H, Weinstein JN, Kaldjian EP, Karpovich J, Grimshaw A, Theodorescu D.

AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets
Bioinformatics. 2007 Jul 27
Liu H, Zeeberg BR, Gang Q, Koru AG, Ferrucci A, Kahn A, Ryan MC, Nuhanovic A, Munson PJ, Reinhold WC, Kane DW, Weinstein JN

Signal pathway profiling of epithelial and stromal compartments of colonic carcinoma reveals epithelial-mesenchymal transition
Oncogene. 2007 Jul 9
Sheehan KM, Gulmann C, Eichler GS, Weinstein JN, Barrett HL, Kay EW, Conroy RM, Liotta LA, Petricoin EF

MicroRNA expression profiles for the NCI-60 cancer cell panel
Mol Cancer Ther 2007;6(5):1483-91
Blower PE, Verducci JS, Lin S, Zhou J, Chung JH, Dai Z, Liu CG, Reinhold W, Lorenzi PL, Kaldjian EP, Croce CM, Weinstein JN, Sadee W.

Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study
Mol Cancer Ther 2007;6(3):820-32
Shankavaram UT, Reinhold WC, Nishizuka S, Major S, Morita D, Chary KK, Reimers MA, Scherf U, Kahn A, Dolginow D, Cossman J, Kaldjian EP, Scudiero DA, Petricoin E, Liotta L, Lee JK, Weinstein JN

Multiplexing siRNAs to compress RNAi-based screen size in human cells
Nucleic Acids Res. 2007 Mar 28
Martin SE, Jones TL, Thomas CL, Lorenzi PL, Nguyen DA, Runfola T, Gunsior M, Weinstein JN, Goldsmith PK, Lader E, Huppi K, Caplen NJ

SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis
BMC Bioinformatics. 2007 Mar 5;8(1):75
Kahn AB, Ryan MC, Liu H, Zeeberg BR, Jamison DC, Weinstein JN.

Detailed DNA methylation profiles of the E-cadherin promoter in the NCI-60 cancer cells
Mol Cancer Ther. 2007 Feb;6(2):391-403.
Reinhold WC, Reimers MA, Maunakea AK, Kim S, Lababidi S, Scherf U, Shankavaram UT, Ziegler MS, Stewart C, Kouros-Mehr H, Cui H, Dolginow D, Scudiero DA, Pommier YG, Munroe DJ, Feinberg AP, Weinstein JN


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