Gene DNA copy number
This tool provides access to the DNA copy number computed as a combined value from four array-CGH platforms:
Agilent 44K, Affymetrix 500K, NimbleGen 385K and Illumina 1M.
The tool provides an Excel spreadsheet for each gene that includes:
- the estimated DNA copy number in tabular and graphical forms (see below),
- scatter plots of the probes intensities that fall within the gene in addition to 2 million nucleotides flanking region,
- the normalized data for those probes that fall within a gene of interest as well as its flanking regions in tabular form.
The data is queryable by gene or chromosomal location using Query Genomic Data under "DNA: Combined aCGH" (http://discover.nci.nih.gov/cellminer/queryLoad.do).
The data can be downloaded in total at Download Data Sets under "DNA: Combined aCGH" (http://discover.nci.nih.gov/cellminer/loadDownload.do).
A brief platform description is available in Data Set Metadata under "DNA: Combined aCGH" (http://discover.nci.nih.gov/cellminer/datasets.do).
|
| Table 1: Estimated DNA copy values |
|
| BR:MCF7 |
0.15 |
2.22 |
| BR:MDA_MB_231 |
-0.24 |
1.69 |
| BR:HS578T |
0.36 |
2.57 |
| BR:BT_549 |
-0.03 |
1.96 |
| BR:T47D |
0.11 |
2.16 |
| CNS:SF_268 |
-0.03 |
1.95 |
| CNS:SF_295 |
0.00 |
1.99 |
| CNS:SF_539 |
0.47 |
2.76 |
| CNS:SNB_19 |
-0.06 |
1.92 |
| CNS:SNB_75 |
0.11 |
2.16 |
| CNS:U251 |
-0.07 |
1.9 |
| CO:COLO205 |
0.32 |
2.49 |
| CO:HCC_2998 |
0.05 |
2.07 |
| CO:HCT_116 |
0.03 |
2.04 |
| CO:HCT_15 |
0.08 |
2.11 |
| CO:HT29 |
0.30 |
2.47 |
| CO:KM12 |
0.04 |
2.06 |
| CO:SW_620 |
-0.08 |
1.89 |
| LE:CCRF_CEM |
0.14 |
2.21 |
| LE:HL_60 |
0.05 |
2.07 |
| LE:K_562 |
-0.27 |
1.65 |
| LE:MOLT_4 |
0.05 |
2.07 |
| LE:RPMI_8226 |
0.10 |
2.15 |
| LE:SR |
-0.01 |
1.99 |
| ME:LOXIMVI |
-0.03 |
1.95 |
| ME:MALME_3M |
0.12 |
2.17 |
| ME:M14 |
0.24 |
2.36 |
| ME:SK_MEL_2 |
0.22 |
2.34 |
| ME:SK_MEL_28 |
0.37 |
2.58 |
| ME:SK_MEL_5 |
0.11 |
2.15 |
| ME:UACC_257 |
0.15 |
2.22 |
| ME:UACC_62 |
0.52 |
2.86 |
| ME:MDA_MB_435 |
0.44 |
2.70 |
| ME:MDA_N |
0.035 |
2.55 |
| LC:A549 |
-0.29 |
1.64 |
| LC:EKVX |
-0.27 |
1.66 |
| LC:HOP_62 |
0.10 |
2.15 |
| LC:HOP_92 |
-0.03 |
1.95 |
| LC:NCI_H226 |
0.09 |
2.13 |
| LC:NCI_H23 |
0.13 |
2.19 |
| LC:NCI_H322M |
-0.13 |
1.83 |
| LC:NCI_H460 |
-0.12 |
1.84 |
| LC:NCI_H522 |
-0.20 |
1.74 |
| OV:IGROV1 |
-0.06 |
1.92 |
| OV:OVCAR_3 |
0.40 |
2.64 |
| OV:OVCAR_4 |
0.34 |
2.52 |
| OV:OVCAR_5 |
-0.13 |
1.82 |
| OV:OVCAR_8 |
0.29 |
2.44 |
| OV:SK_OV_3 |
0.05 |
2.08 |
| OV:NCI_ADR_RES |
0.35 |
2.55 |
| PR:PC_3 |
-0.14 |
1.82 |
| PR:DU_145 |
-0.19 |
1.75 |
| RE:786_0 |
0.16 |
2.23 |
| RE:A498 |
-0.03 |
1.96 |
| RE:ACHN |
-0.07 |
1.90 |
| RE:CAKI_1 |
0.07 |
2.10 |
| RE:RXF_393 |
-0.25 |
1.69 |
| RE:SN12C |
0.71 |
2.26 |
| RE:TK_10 |
0.19 |
2.28 |
| RE:UO_31 |
0.32 |
2.50 |
|
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Scatter plot
