CellMiner - Download Datasets

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NCI-60 Analysis Tools

Download Raw Data Set

Download .cel files, pixel intensities, or the like, depending on platform. See the "Data Set Metadata" page to see the raw data description.

Step 1 - Select a data set:

Large datasets available from GEO (due to size constraints):

• DNA: Affy 500K • DNA: Illumina 1M SNP • RNA: Affy HuEx 1.0

All others available from CellMiner:

DNA: aCGH Agilent 44K DNA: E-cadherin Methylation DNA: Fingerprinting
DNA: Roche NimbleGen 385k aCGH DNA: Sanger Sequencing DNA: Sequenom methylation
RNA: Affy HG-U133 Plus 2.0 RNA: Affy HG-U133A RNA: Affy HG-U133B
RNA: Affy HG-U95(A-E) RNA: Agilent Human microRNA (V2) RNA: Agilent mRNA
RNA: microRNA OSU V3 chip RNA: OSU Transporter Array Protein: Lysate Array
Compound activity: DTP NCI-60

Download Processed Data Set

Download processed values ready for analysis and/or integration with other data sets.

Step 1 - Select one or more chip/processing method(s) to download:

Data type Data type

DNA: aCGH Agilent 44K DNA: Affy 500K SNP
DNA: Combined aCGH DNA: E-cadherin Methylation
DNA: Exome Seq DNA: Illumina 1M SNP
DNA: Roche NimbleGen 385k aCGH RNA: 5 Platform Gene Transcript
RNA: ABC Transporters (RT-PCR) RNA: Affy HG-U133 Plus 2.0
RNA: Affy HG-U133(A-B) RNA: Affy HG-U95(A-E)
RNA: Affy HuEx 1.0 RNA: Agilent Human microRNA (V2)
RNA: Agilent mRNA RNA: microRNA OSU V3 chip
RNA: OSU Transporter Array Protein: Lysate Array
Compound activity: DTP NCI-60

CellMiner™ is a development of the Genomics and Bioinformatics Group, Developmental Therapeutics Branch (DTB), Developmental Therapeutics Program (DTP), Center for Cancer Research (CCR), National Cancer Institute (NCI). Please email us with any problems, questions or feedback on the tool.

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