Protein SWATH values

This tool provides access to gene protein levels, as determined using SWATH-mass spectrophotometry a proteomic technique that consists of data independent acquisition and a targeted data analysis strategy.

The tool provides an Excel spreadsheet for each gene the user has input that includes:

  1. Mean centered protein levels in tabular form and as a bar plot (see below)
  2. a table of Peptide peak log10 transformed areas under the curve.
  3. distribution of Protein levels by bin in tabular form and as a bar plot

The data is queryable by gene or chromosomal location using Query Genomic Data under "Protein: SWATH (Mass spectromitry)" (http://discover.nci.nih.gov/cellminer/queryLoad.do) and is available by peptide or by protein.
The data may be obtained in toto at Download Data Sets under "Protein: SWATH (Mass spectromitry)" (http://discover.nci.nih.gov/cellminer/loadDownload.do).
A brief platform description is available in Data Set Metadata under "Protein: SWATH (Mass spectromitry)" (http://discover.nci.nih.gov/cellminer/datasets.do).


Table 1: Mean centered protein levels
Cell lines Expression level

BR:MCF70.254
BR:MDA-MB-2310.031
BR:HS 578T-0.047
BR:BT-5490.026
BR:T-47D0.038
CNS:SF-268-0.78
CNS:SF-295-0.109
CNS:SF-5390.226
CNS:SNB-190.14
CNS:SNB-750.133
CNS:U2510.102
CO:COLO 2050.026
CO:HCC-29980.157
CO:HCT-116-0.058
CO:HCT-150.459
CO:HT290.215
CO:KM120.069
CO:SW-620-0.014
LE:CCRF-CEM-0.344
LE:HL-60(TB)-0.124
LE:K-562-0.014
LE:MOLT-4-0.006
LE:RPMI-8226-0.039
LE:SR-0.78
ME:LOX IMVI0.061
ME:MALME-3M0.134
ME:M140.002
ME:SK-MEL-20.169
ME:SK-MEL-28-0.034
ME:SK-MEL-50.054
ME:UACC-2570.104
ME:UACC-620.028
ME:MDA-MB-4350.029
ME:MDA-N-
LC:A549/ATCC-0.78
LC:EKVX0.082
LC:HOP-620.114
LC:HOP-92-0.78
LC:NCI-H2260.407
LC:NCI-H230.13
LC:NCI-H322M-0.054
LC:NCI-H4600.077
LC:NCI-H5220.058
OV:IGROV1-0.109
OV:OVCAR-30.165
OV:OVCAR-4-0.051
OV:OVCAR-5-0.78
OV:OVCAR-80.077
OV:SK-OV-30.085
OV:NCI/ADR-RES1.073
PR:PC-30.117
PR:DU-1450.06
RE:786-00.201
RE:A4980.137
RE:ACHN-0.099
RE:CAKI-10.412
RE:RXF 393-0.151
RE:SN12C0.019
RE:TK-10-0.78
RE:UO-310.259
      This is a bar chart of the nci60 cell lines with the Protein levels (a visual representation of the data contained in table 1).