Protein SWATH values
This tool provides access to gene protein levels, as determined using SWATH-mass spectrophotometry a proteomic technique that consists of data independent acquisition and a targeted data analysis strategy.
The tool provides an Excel spreadsheet for each gene the user has input that includes:
- Mean centered protein levels in tabular form and as a bar plot (see below)
- a table of Peptide peak log10 transformed areas under the curve.
- distribution of Protein levels by bin in tabular form and as a bar plot
The data is queryable by gene or chromosomal location using Query Genomic Data under "Protein: SWATH (Mass spectromitry)" (http://discover.nci.nih.gov/cellminer/queryLoad.do)
and is available by peptide or by protein.
The data can be downloaded in total at Download Data Sets under "Protein: SWATH (Mass spectromitry)" (http://discover.nci.nih.gov/cellminer/loadDownload.do).
A brief platform description is available in Data Set Metadata under "Protein: SWATH (Mass spectromitry)" (http://discover.nci.nih.gov/cellminer/datasets.do).
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| Table 1: Mean centered protein levels |
|
| BR:MCF7 | 0.254 |
|---|
| BR:MDA-MB-231 | 0.031 |
| BR:HS 578T | -0.047 |
| BR:BT-549 | 0.026 |
| BR:T-47D | 0.038 |
| CNS:SF-268 | -0.78 |
| CNS:SF-295 | -0.109 |
| CNS:SF-539 | 0.226 |
| CNS:SNB-19 | 0.14 |
| CNS:SNB-75 | 0.133 |
| CNS:U251 | 0.102 |
| CO:COLO 205 | 0.026 |
| CO:HCC-2998 | 0.157 |
| CO:HCT-116 | -0.058 |
| CO:HCT-15 | 0.459 |
| CO:HT29 | 0.215 |
| CO:KM12 | 0.069 |
| CO:SW-620 | -0.014 |
| LE:CCRF-CEM | -0.344 |
| LE:HL-60(TB) | -0.124 |
| LE:K-562 | -0.014 |
| LE:MOLT-4 | -0.006 |
| LE:RPMI-8226 | -0.039 |
| LE:SR | -0.78 |
| ME:LOX IMVI | 0.061 |
| ME:MALME-3M | 0.134 |
| ME:M14 | 0.002 |
| ME:SK-MEL-2 | 0.169 |
| ME:SK-MEL-28 | -0.034 |
| ME:SK-MEL-5 | 0.054 |
| ME:UACC-257 | 0.104 |
| ME:UACC-62 | 0.028 |
| ME:MDA-MB-435 | 0.029 |
| ME:MDA-N | - |
| LC:A549/ATCC | -0.78 |
| LC:EKVX | 0.082 |
| LC:HOP-62 | 0.114 |
| LC:HOP-92 | -0.78 |
| LC:NCI-H226 | 0.407 |
| LC:NCI-H23 | 0.13 |
| LC:NCI-H322M | -0.054 |
| LC:NCI-H460 | 0.077 |
| LC:NCI-H522 | 0.058 |
| OV:IGROV1 | -0.109 |
| OV:OVCAR-3 | 0.165 |
| OV:OVCAR-4 | -0.051 |
| OV:OVCAR-5 | -0.78 |
| OV:OVCAR-8 | 0.077 |
| OV:SK-OV-3 | 0.085 |
| OV:NCI/ADR-RES | 1.073 |
| PR:PC-3 | 0.117 |
| PR:DU-145 | 0.06 |
| RE:786-0 | 0.201 |
| RE:A498 | 0.137 |
| RE:ACHN | -0.099 |
| RE:CAKI-1 | 0.412 |
| RE:RXF 393 | -0.151 |
| RE:SN12C | 0.019 |
| RE:TK-10 | -0.78 |
| RE:UO-31 | 0.259 |
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