Gene transcript z scores

This tool compiles all non-degenerate transcript probe data from five microarray platforms.

The tool provides an Excel spreadsheet for each gene the user has input that includes:

average intensity Z scores in a tabular form and visualized as a bar graph (see below).
intensity values for those probes that passed quality control to a maximum of 253
the z-score transforms for each probe that passed quality control to a maximum of 253.

The data can be downloaded in total at Download Data Sets under "RNA: 5 Platform Gene Transcript" (http://discover.nci.nih.gov/cellminer/loadDownload.do).
A brief platform description is available in Data Set Metadata under "RNA: 5 Platform Gene Transcript" (http://discover.nci.nih.gov/cellminer/datasets.do).

Table 1: Average transcript intensity Z scores

Cell lines	Average Z scores

BR:MCF7	1.31
BR:MDA_MB_231	-1.01
BR:HS578T	-0.39
BR:BT_549	0.88
BR:T47D	0.64
CNS:SF_268	-0.49
CNS:SF_295	-0.69
CNS:SF_539	na
CNS:SNB_19	-1.39
CNS:SNB_75	-0.42
CNS:U251	-0.96
CO:COLO205	0.49
CO:HCC_2998	1.04
CO:HCT_116	1.23
CO:HCT_15	1.62
CO:HT29	1.35
CO:KM12	0.75
CO:SW_620	-0.92
LE:CCRF_CEM	0.61
LE:HL_60	1.28
LE:K_562	0.93
LE:MOLT_4	0.66
LE:RPMI_8226	1.09
LE:SR	0.12
ME:LOXIMVI	-0.91
ME:MALME_3M	0.12
ME:M14	-0.34
ME:SK_MEL_2	-1.22
ME:SK_MEL_28	1.36
ME:SK_MEL_5	-0.12
ME:UACC_257	0.36
ME:UACC_62	0.20
ME:MDA_MB_435	1.02
ME:MDA_N	0.50
LC:A549	-0.76
LC:EKVX	-1.01
LC:HOP_62	-1.01
LC:HOP_92	-0.85
LC:NCI_H226	-1.79
LC:NCI_H23	0.97
LC:NCI_H322M	0.67
LC:NCI_H460	0.05
LC:NCI_H522	0.56
OV:IGROV1	-0.87
OV:OVCAR_3	1.60
OV:OVCAR_4	0.98
OV:OVCAR_5	-0.93
OV:OVCAR_8	-0.82
OV:SK_OV_3	-0.25
OV:NCI_ADR_RES	-0.90
PR:PC_3	0.32
PR:DU_145	0.05
RE:786_0	-0.58
RE:A498	-1.08
RE:ACHN	-0.61
RE:CAKI_1	-0.40
RE:RXF_393	-0.28
RE:SN12C	0.06
RE:TK_10	-0.59
RE:UO_31	-1.18

Table 1: Average transcript intensity Z scores