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Kohn Interaction Maps

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Kohn Interaction Maps

Symbol Definition Table

Annotation List

References

Molecular Species Index

Abbreviations

RNfb program files

Abbreviations

Abbreviations:

  • ara-C, 1-β-D-arabinofuransylcytosine;
  • ARF, alternate reading frame of the ink4a locus (murine p19, human p14);
  • ATM, ataxia telangiectasia mutated gene/protein;
  • BRCT, homologous to breast cancer protein 1 C-terminal module;
  • CAK, Cdk-activating kinase (consisting of Cyclin H, Cdk7, and p36MAT1);
  • CK1, casein kinase 1, etc.;
  • CPT, camptothecin;
  • CycA, Cyclin A, etc.;
  • DNA-PK, DNA-dependent protein kinase (catalytic unit, not including Ku);
  • DPase, DNA polymerase;
  • ERCC, excision-repair cross-complementing;
  • dsb, DNA double-strand breaks or double-strand ends;
  • dsDNA, double-stranded DNA;
  • E2, recognition sites in promoters that bind E2F transcription factors;
  • HDAC, histone deacetylase;
  • HMG, high-mobility group protein;
  • Ku, Ku70:Ku80/86 heterodimer (same as XRCC5 and 6);
  • IR, ionizing radiation;
  • MMS, methylmethanesulfonate;
  • NER, nucleotide excision repair;
  • pAR, poly(ADP-ribose); PARP, poly(ADP-ribose) polymerase;
  • Plk, mammalian polo-like kinase;
  • RHA, RNA helicase A;
  • RPA, replication protein A (comprised of subunits p70RPA1, p34RPA2, and p14RPA3);
  • RPase, RNA polymerase;
  • ssb, DNA single-strand breaks;
  • ssDNA, single-stranded DNA;
  • TAF, TBP-associated factor;
  • TBP, TATA-binding protein;
  • UV, ultraviolet light;
  • TFIIH, transcription factor IIH;
  • Top1, topoisomerase I;
  • WT1, Wilms? tumor suppressor gene/protein;
  • XPA, xeroderma pigmentosum complementation group A gene/protein (similarly for XPB, etc.);
  • XRCC1, X-ray repair cross-complementing gene/protein 1.


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